Examples
========

Below you can find examples of how Pastas models are used for the analysis
of groundwater levels. Examples in the form of Python scripts can also be found
on the `examples directory on GitHub <https://github.com/pastas/pastas/tree/master/doc/examples>`_.

.. toctree::
    :maxdepth: 4
    :hidden:
    :glob:

    ./*

Basics
------

`Preprocessing user-provided time series`_

`A basic model`_

`Fixating parameters while fitting`_

`Calibration`_

.. _Preprocessing user-provided time series: 00_prepare_timeseries.ipynb
.. _A basic model: 01_basic_model.ipynb
.. _Fixating parameters while fitting: 02_fix_parameters.ipynb
.. _Calibration: 03_calibration_options.ipynb


Stressmodels
------------

`Adding surface water levels`_

`Adding pumping wells`_

`Adding multiple wells`_

`Adding trends`_

`Changing response functions`_

.. _Adding surface water levels: 04_adding_rivers.ipynb
.. _Adding pumping wells: 05_adding_wells.ipynb
.. _Adding multiple wells: 06_multiple_wells.ipynb
.. _Adding trends: 07_adding_trends.ipynb
.. _Changing response functions: 08_changing_responses.ipynb

Non-linear (Recharge) Models
~~~~~~~~~~~~~~~~~~~~~~~~~~~~

`Threshold non-linearities`_

`Non-linear recharge models`_

`Estimating recharge`_

`Modeling snow`_

.. _Threshold non-linearities: 09_threshold_non_linear.ipynb
.. _Non-linear recharge models: 10_non_linear.ipynb
.. _Estimating recharge: 11_recharge_estimation.ipynb
.. _Modeling snow: 12_snowmodel.ipynb


Model Evaluation
----------------

`Comparing models visually`_

`Diagnostics checking`_

`Reducing autocorrelation`_

`Uncertainty quantification`_

`MCMC uncertainty`_

.. _Comparing models visually: 13_comparing_models.ipynb
.. _Diagnostics checking: 14_diagnostics_checking.ipynb
.. _`Reducing autocorrelation`: 15_timestep_analysis.ipynb
.. _Uncertainty quantification: 16_uncertainty.ipynb
.. _MCMC uncertainty: 17_emcee_uncertainty.ipynb


Applications
------------

`Standardized Groundwater Index`_

`Groundwater signatures`_

.. _Standardized Groundwater Index: 18_sgi_example.ipynb
.. _Groundwater signatures: 19_signatures.ipynb